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{"sheet":"Table S4","index":0,"n_rows":108,"n_cols":6,"rows_kept":108,"merged":[[0,0,0,5],[2,0,4,0],[2,1,4,1],[2,2,4,2],[2,3,4,3],[5,0,7,0],[5,1,7,1],[5,2,7,2],[5,3,7,3],[8,0,10,0],[8,1,10,1],[8,2,10,2],[8,3,10,3],[11,0,13,0],[11,1,13,1],[11,2,13,2],[11,3,13,3],[14,0,16,0],[14,1,16,1],[14,2,16,2],[14,3,16,3],[17,0,19,0],[17,1,19,1],[17,2,19,2],[17,3,19,3],[20,0,22,0],[20,1,22,1],[20,2,22,2],[20,3,22,3],[23,0,25,0],[23,1,25,1],[23,2,25,2],[23,3,25,3],[26,0,28,0],[26,1,28,1],[26,2,28,2],[26,3,28,3],[29,0,31,0],[29,1,31,1],[29,2,31,2],[29,3,31,3],[32,0,34,0],[32,1,34,1],[32,2,34,2],[32,3,34,3],[35,0,37,0],[35,1,37,1],[35,2,37,2],[35,3,37,3],[38,0,40,0],[38,1,40,1],[38,2,40,2],[38,3,40,3],[41,0,43,0],[41,1,43,1],[41,2,43,2],[41,3,43,3],[44,0,46,0],[44,1,46,1],[44,2,46,2],[44,3,46,3],[47,0,49,0],[47,1,49,1],[47,2,49,2],[47,3,49,3],[50,0,52,0],[50,1,52,1],[50,2,52,2],[50,3,52,3],[53,0,55,0],[53,1,55,1],[53,2,55,2],[53,3,55,3],[56,0,58,0],[56,1,58,1],[56,2,58,2],[56,3,58,3],[59,0,61,0],[59,1,61,1],[59,2,61,2],[59,3,61,3],[62,0,64,0],[62,1,64,1],[62,2,64,2],[62,3,64,3],[65,0,67,0],[65,1,67,1],[65,2,67,2],[65,3,67,3],[68,0,70,0],[68,1,70,1],[68,2,70,2],[68,3,70,3],[71,0,73,0],[71,1,73,1],[71,2,73,2],[71,3,73,3],[74,0,76,0],[74,1,76,1],[74,2,76,2],[74,3,76,3],[77,0,79,0],[77,1,79,1],[77,2,79,2],[77,3,79,3],[80,0,82,0],[80,1,82,1],[80,2,82,2],[80,3,82,3],[83,0,85,0],[83,1,85,1],[83,2,85,2],[83,3,85,3],[86,0,88,0],[86,1,88,1],[86,2,88,2],[86,3,88,3],[89,0,91,0],[89,1,91,1],[89,2,91,2],[89,3,91,3],[92,0,94,0],[92,1,94,1],[92,2,94,2],[92,3,94,3],[95,0,97,0],[95,1,97,1],[95,2,97,2],[95,3,97,3],[98,0,100,0],[98,1,100,1],[98,2,100,2],[98,3,100,3],[101,0,103,0],[101,1,103,1],[101,2,103,2],[101,3,103,3],[104,0,106,0],[104,1,106,1],[104,2,106,2],[104,3,106,3]],"flags":["formulas_cached_only"]}
["Table S4. Primer sequences of the 35 core SNP markers developed in this study."]
["Primer name","Chr.","Physical location","Allele","Primer description ","Primer sequences  (5'-3')"]
["CaSNP004","Chr01",64927233,"C/T","Forward 1 ","CATCACTGTCACTGGCGAACC"]
[{"$nulls":4},"Forward 2 ","ACATCACTGTCACTGGCGAACT"]
[{"$nulls":4},"Reverse ","GGCTGGTGTGGGGTGGTCG"]
["CaSNP006","Chr01",128314154,"A/G","Forward 1 ","GGGTCCAACGGGAGGCCTA"]
[{"$nulls":4},"Forward 2 ","GGTCCAACGGGAGGCCTG"]
[{"$nulls":4},"Reverse ","GATATTTTAGAGTGGTTCCCTTATCTCGTA"]
["CaSNP052","Chr06",388508,"A/C","Forward 1 ","ATATTTGGCCTAAATCACGCTTGGA"]
[{"$nulls":4},"Forward 2 ","ATTTGGCCTAAATCACGCTTGGC"]
[{"$nulls":4},"Reverse ","GCTATAGCCTACATTTTTGGGGATGG"]
["CaSNP061","Chr07",101332262,"A/G","Forward 1 ","TGGTCTAATCCTAGCCAACCCG"]
[{"$nulls":4},"Forward 2 ","GTGGTCTAATCCTAGCCAACCCA"]
[{"$nulls":4},"Reverse ","CGTAGTCTTGACGGTCAGTCGGAA"]
["CaSNP090","Chr10",133308217,"C/T","Forward 1 ","GGACGCAAGGCCAGGCAG"]
[{"$nulls":4},"Forward 2 ","GAGGACGCAAGGCCAGGCAA"]
[{"$nulls":4},"Reverse ","GGTCCAGGTCGGAAAATTTTTGTAAATTTAAA"]
["CaSNP109","Chr12",40630040,"A/T","Forward 1 ","CATTCCGATGAAAATTCTGAATCCTCA"]
[{"$nulls":4},"Forward 2 ","CATTCCGATGAAAATTCTGAATCCTCT"]
[{"$nulls":4},"Reverse ","AAGGTGCTTCCCCAATTATTGTTGCTTA"]
["CaSNP007","Chr01",165812020,"A/G","Forward 1 ","GCTCTTCTCTCCCTCCAGTTCA"]
[{"$nulls":4},"Forward 2 ","CTCTTCTCTCCCTCCAGTTCG"]
[{"$nulls":4},"Reverse ","GAAAGCCCTAAATCCGCGGTGATAA"]
["CaSNP020","Chr02",122900326,"A/C","Forward 1 ","CTATGTAGCCAATGTAAGTTGAGATATC"]
[{"$nulls":4},"Forward 2 ","AACTATGTAGCCAATGTAAGTTGAGATATA"]
[{"$nulls":4},"Reverse ","GAGATATATAAACCCTAGTCTGGCAGAAA"]
["CaSNP054","Chr06",29923116,"C/T","Forward 1 ","ATCTCATTCATAATCTTGTCCCCTCTA"]
[{"$nulls":4},"Forward 2 ","CTCATTCATAATCTTGTCCCCTCTG"]
[{"$nulls":4},"Reverse ","GATGTTGCGTTTGTTGTGTGGGCTTA"]
["CaSNP112","Chr12",181587490,"A/G","Forward 1 ","CAAGACAATCCAAATCCACGCCA"]
[{"$nulls":4},"Forward 2 ","CAAGACAATCCAAATCCACGCCG"]
[{"$nulls":4},"Reverse ","CTTCGCCGGTTGGTTCGCCGTT"]
["CaSNP018","Chr02",93209608,"A/G","Forward 1 ","GTGGGAGGACATATTTTAGACACG"]
[{"$nulls":4},"Forward 2 ","GGTGGGAGGACATATTTTAGACACA"]
[{"$nulls":4},"Reverse ","AATATGTGTGTAGAGAGAAAAGATGAATAAAAAAT"]
["CaSNP036","Chr04",30522616,"C/T","Forward 1 ","ATCTCCACTCCCTCCAATCAGC"]
[{"$nulls":4},"Forward 2 ","TAATCTCCACTCCCTCCAATCAGT"]
[{"$nulls":4},"Reverse ","GCAGTGATTGGTCGCTACTACTAGTT"]
["CaSNP055","Chr06",58719488,"A/G","Forward 1 ","TAGGGAAAGGAAAAGTTTTGATGCTAATAA"]
[{"$nulls":4},"Forward 2 ","GGGAAAGGAAAAGTTTTGATGCTAATAG"]
[{"$nulls":4},"Reverse ","GTATATTTCCTTATCAGGTGCTTGTTTCTAT"]
["CaSNP059","Chr06",200161574,"C/T","Forward 1 ","ATAATAGTTAAGGCAAAAGAAGACCCAC"]
[{"$nulls":4},"Forward 2 ","TTATAATAGTTAAGGCAAAAGAAGACCCAT"]
[{"$nulls":4},"Reverse ","GAAATATCTCCTCCCTTTCTTCCAAGAA"]
["CaSNP062","Chr07",110735031,"C/A","Forward 1 ","CAAACAATTAAAACTGTAAAAGTTACATACC"]
[{"$nulls":4},"Forward 2 ","AACAAACAATTAAAACTGTAAAAGTTACATACA"]
[{"$nulls":4},"Reverse ","GGGTATCAAAAGTGTAATTGTTGTGGG"]
["CaSNP068","Chr08",126315482,"A/G","Forward 1 ","CGATGTTGTACCTGTTCCATTGTGA"]
[{"$nulls":4},"Forward 2 ","GATGTTGTACCTGTTCCATTGTGG"]
[{"$nulls":4},"Reverse ","CCGCGATTAGCCAGTATTGTATCAAAAA"]
["CaSNP071","Chr09",159969,"C/T","Forward 1 ","CTTGGACATAATAGCTGAATTGCCTAAA"]
[{"$nulls":4},"Forward 2 ","TTGGACATAATAGCTGAATTGCCTAAG"]
[{"$nulls":4},"Reverse ","CATAAGCAGCATAATCCATCAGCTTCAA"]
["CaSNP095","Chr11",20394748,"A/C","Forward 1 ","ATTTGAGATATGGATCTTTCTAGATTGATAATT"]
[{"$nulls":4},"Forward 2 ","TTGAGATATGGATCTTTCTAGATTGATAATG"]
[{"$nulls":4},"Reverse ","TTTAACTTCTCTTTCTCAATCTGTTGAGCAT"]
["CaSNP097","Chr11",83162468,"C/T","Forward 1 ","CTCTCAATGACAATCCATTCGATAGAT"]
[{"$nulls":4},"Forward 2 ","TCTCAATGACAATCCATTCGATAGAC"]
[{"$nulls":4},"Reverse ","CATCAATGGCCCGTTGGTAGGCTA"]
["CaSNP011","Chr01",268028719,"C/T","Forward 1 ","GTAGCTTAAATCATGAGTAACAAACATAATC"]
[{"$nulls":4},"Forward 2 ","AAGTAGCTTAAATCATGAGTAACAAACATAATT"]
[{"$nulls":4},"Reverse ","GAAACTACGTGTAGTGATTCAGTAGCTTAT"]
["CaSNP069","Chr08",140042041,"T/G","Forward 1 ","CTTTATTTGACTTCTGCTTTTGCTAAAAATAAT"]
[{"$nulls":4},"Forward 2 ","TTTATTTGACTTCTGCTTTTGCTAAAAATAAG"]
[{"$nulls":4},"Reverse ","GACTCTGCGTCTGTTGTTCAAATAAAAATTT"]
["CaSNP003","Chr01",46784687,"A/G","Forward 1 ","TAGGGTCATTAAGAGAATTTATTGATATCC"]
[{"$nulls":4},"Forward 2 ","CTTAGGGTCATTAAGAGAATTTATTGATATCT"]
[{"$nulls":4},"Reverse ","TTCTCTATATGGATGGGAAACTTGATGTAAA"]
["CaSNP016","Chr02",75886898,"A/G","Forward 1 ","CCAACAATAACATGAAAATGAATTCGATTC"]
[{"$nulls":4},"Forward 2 ","CCCAACAATAACATGAAAATGAATTCGATTT"]
[{"$nulls":4},"Reverse ","AAGATTGTTGAATTATGAACTTCCATAGTTAAATT"]
["CaSNP037","Chr04",42814994,"A/T","Forward 1 ","TCCCACATCTATTAGCCCCAAAACA"]
[{"$nulls":4},"Forward 2 ","TCCCACATCTATTAGCCCCAAAACT"]
[{"$nulls":4},"Reverse ","GAATGAATAGTTTTTTCTATTAGAAGGGTTAATTT"]
["CaSNP047","Chr05",85520600,"C/T","Forward 1 ","CTCTTGTTTACTATTCCTTATCTTGAGCT"]
[{"$nulls":4},"Forward 2 ","CTTGTTTACTATTCCTTATCTTGAGCC"]
[{"$nulls":4},"Reverse ","GAAGAAGTAGAGAGGTTGTTTCCCGAT"]
["CaSNP070","Chr08",147458068,"C/T","Forward 1 ","CTCACAATTTCGGTTTCATCAACAACTT"]
[{"$nulls":4},"Forward 2 ","TCACAATTTCGGTTTCATCAACAACTC"]
[{"$nulls":4},"Reverse ","TGGGGGGAAGAATCCAAAAGAGGTA"]
["CaSNP083","Chr10",1684877,"A/G","Forward 1 ","TTAGCTGGTCAAACTAGCGAAACGA"]
[{"$nulls":4},"Forward 2 ","GCTGGTCAAACTAGCGAAACGG"]
[{"$nulls":4},"Reverse ","CGATTTGGCCTAAAAATGCCCCTTCAT"]
["CaSNP085","Chr10",49575961,"A/G","Forward 1 ","GGTAAGGCATAAAACCAATTTTGGCG"]
[{"$nulls":4},"Forward 2 ","TGGTAAGGCATAAAACCAATTTTGGCA"]
[{"$nulls":4},"Reverse ","CATCATCCAGTATTGGTGGTGGTCAA"]
["CaSNP094","Chr11",7376328,"C/T","Forward 1 ","GCCTCCTAGTGTTGTCCGTTTG"]
[{"$nulls":4},"Forward 2 ","AGCCTCCTAGTGTTGTCCGTTTA"]
[{"$nulls":4},"Reverse ","CCGTTTTGGTTGTTTGACCACCCAAAT"]
["CaSNP110","Chr12",157503920,"T/C","Forward 1 ","GTTGCGATTGCTGGAGACCGAAA"]
[{"$nulls":4},"Forward 2 ","TTGCGATTGCTGGAGACCGAAG"]
[{"$nulls":4},"Reverse ","CCGCAGCACCCAAATAATGACCATTT"]
["CaSNP001","Chr01",657915,"C/T","Forward 1 ","TCTCTGTTCATGTATCCGTACTGGT"]
[{"$nulls":4},"Forward 2 ","TCTGTTCATGTATCCGTACTGGC"]
[{"$nulls":4},"Reverse ","CAGTACGTTTATATTTATGTTGAATCGGGTA"]
["CaSNP057","Chr06",84899684,"G/T","Forward 1 ","ACTGTCTGAACATAATCGTCTGGAAAT"]
[{"$nulls":4},"Forward 2 ","CTGTCTGAACATAATCGTCTGGAAAG"]
[{"$nulls":4},"Reverse ","CCTTACTCAGACAGTTCCGTCAGTTA"]
["CaSNP117","Chr00",153471050,"A/G","Forward 1 ","CAAAAAATGTCATATTTCTATAATTCGAAACAA"]
[{"$nulls":4},"Forward 2 ","CAAAAAATGTCATATTTCTATAATTCGAAACAG"]
[{"$nulls":4},"Reverse ","ATAAATCATTTCGTTAAGGAGAAAAGAGAAAATTT"]
["CaSNP051","Chr05",206239166,"A/T","Forward 1 ","ATAAAGGAATTATTTTCAATACCTCATTAATAAAAA"]
[{"$nulls":4},"Forward 2 ","ATAAAGGAATTATTTTCAATACCTCATTAATAAAAT"]
[{"$nulls":4},"Reverse ","CTCATTATGAAGATGTGGACTGAGGATTTT"]
["CaSNP126","Chr00",426331294,"A/G","Forward 1 ","GTGTGAATCAGCAAAGACCACCTTAT"]
[{"$nulls":4},"Forward 2 ","TGTGAATCAGCAAAGACCACCTTAC"]
[{"$nulls":4},"Reverse ","CACTATCGGTCACCCAGGAGTATTTA"]
["a Chromosome and position of the core-SNPs are indicated based on the reference genome of C. annuum cultivars, Zunla-1."]